Package: hwde 0.67-3

hwde: Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci

Fits models for genotypic disequilibria, as described in Huttley and Wilson (2000) <doi:10.1093/genetics/156.4.2127>, Weir (1996) and Weir and Wilson (1986). Contrast terms are available that account for first order interactions between loci. Also implements, for a single locus in a single population, a conditional exact test for Hardy-Weinberg equilibrium.

Authors:John Maindonald, with \code{hwexact} from Randall Johnson.

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hwde.pdf |hwde.html
hwde/json (API)
NEWS

# Install 'hwde' in R:
install.packages('hwde', repos = c('https://jhmaindonald.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jhmaindonald/hwde/issues

Datasets:
  • IndianIrish - Observed genotype frequencies at MN and S loci, for 2 populations
  • mendelABC - Mendel's F2 trifactorial data for seed shape

On CRAN:

3.74 score 11 scripts 333 downloads 1 mentions 4 exports 0 dependencies

Last updated 1 years agofrom:d655ddf5fe. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 07 2024
R-4.5-winNOTENov 07 2024
R-4.5-linuxNOTENov 07 2024
R-4.4-winNOTENov 07 2024
R-4.4-macNOTENov 07 2024
R-4.3-winNOTENov 07 2024
R-4.3-macNOTENov 07 2024

Exports:decode.genotypeshwdehwexactmake.contrasts

Dependencies:

hwde: An R Package for Tests and Models for Genotypic Disequilibria

Rendered fromhwde.Rnwusingutils::Sweaveon Nov 07 2024.

Last update: 2023-08-22
Started: 2023-08-22